Plot a violin plot with categorical groups — sn_plot

This function plots a violin plot with categorical groups using the VlnPlot function from the Seurat package.

Usage

sn_plot_violin(
  object,
  features,
  pt_size = 0,
  sort = FALSE,
  group_by = NULL,
  split_by = NULL,
  show_legend = FALSE,
  angle_x = 0,
  palette = "Paired",
  aspect_ratio = 0.5
)

Arguments

object: A Seurat object containing the data to plot.
features: A character vector of feature names to plot.
pt_size: The size of the points to plot.
sort: Whether to sort the features by their mean expression or not.
group_by: A character vector specifying the grouping variable. Defaults to "ident".
split_by: A character vector specifying the splitting variable.
show_legend: Whether to show the legend or not. Defaults to FALSE.
angle_x: The angle of the x-axis labels. Defaults to 0.
palette: The color palette to use. Defaults to "Paired".
aspect_ratio: The aspect ratio of the plot. Defaults to 0.5.

Value

A ggplot2 object.

Examples

if (FALSE) { # \dontrun{
sn_plot_violin(object = mySeuratObject, features = c("CD3D", "CD8A", "CD4"))
} # }