Retrieve a stored enrichment result from a Seurat object

Retrieve a stored enrichment result from a Seurat object

Usage

sn_get_enrichment_result(
  object,
  enrichment_name = "default",
  top_n = NULL,
  groups = NULL,
  with_metadata = FALSE
)

Arguments

object

A Seurat object.

enrichment_name

Name of the stored enrichment result.

top_n

Optional number of top terms to keep.

groups

Optional subset of cluster/group labels when the stored table includes a Cluster column.

with_metadata

If TRUE, return the full stored result list instead of just the term table.

Value

A tibble or stored-result list.

Examples

if (FALSE) { # \dontrun{
terms <- sn_get_enrichment_result(seurat_obj, enrichment_name = "cluster_gsea", top_n = 10)
} # }