Add metadata and embeddings exported from AnnData — sn_add_data_from_anndata • Shennong

Reads metadata and/or embedding tables from disk and adds them back to a Seurat object.

Usage

sn_add_data_from_anndata(
  object,
  metadata_path = NULL,
  umap_path = NULL,
  key = "umap"
)

Arguments

object: A Seurat object.
metadata_path: Optional path to a metadata table whose first column contains cell names.
umap_path: Optional path to an embedding table whose first column contains cell names.
key: Reduction key used when storing the imported embedding.

Value

The updated Seurat object.

Examples

if (FALSE) { # \dontrun{
object <- sn_add_data_from_anndata(
  object,
  metadata_path = "obs.csv",
  umap_path = "umap.csv"
)
} # }